From 7c28c70d5c9a98074ce31512f215ac52e3ae2426 Mon Sep 17 00:00:00 2001 From: Copilot <198982749+Copilot@users.noreply.github.com> Date: Wed, 13 Aug 2025 18:57:25 -0600 Subject: [PATCH] Switch from Poetry to uv for package management (#2008) * Initial plan * Switch from Poetry to uv for package management Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com> * Clean up build artifacts and update gitignore Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com> * remove build artifacts * remove hardcoded version string * fix calls to pip in cicd * Update gh-pages.yml workflow to use uv instead of Poetry Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com> * ruff formatting fixes * update cicd workflow with latest uv action * fix command to retrieve package version * update development instructions * remove Poetry references * Replace deprecated azuright action with npm-based Azurite installation Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com> * skip api version check for azurite * add semversioner file * update more changes from switching to UV * Migrate unified-search-app from Poetry to uv package management Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com> * minor typo update * minor Dockerfile update * update cicd thresholds * update pytest thresholds * ruff fixes * ruff fixes * remove legacy npm settings that no longer apply * Update Unified Search App Readme --------- Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com> Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com> Co-authored-by: Josh Bradley Co-authored-by: Alonso Guevara --- .github/workflows/gh-pages.yml | 15 +- .github/workflows/python-ci.yml | 24 +- .../workflows/python-integration-tests.yml | 28 +- .github/workflows/python-notebook-tests.yml | 18 +- .github/workflows/python-publish.yml | 13 +- .github/workflows/python-smoke-tests.yml | 30 +- .gitignore | 2 + .../minor-20250728163653403774.json | 4 + .vscode/launch.json | 6 +- .vscode/settings.json | 37 +- CONTRIBUTING.md | 2 +- DEVELOPING.md | 44 +- docs/developing.md | 48 +- .../index_migration_to_v1.ipynb | 3 +- docs/index/overview.md | 3 +- .../graph-visualization.ipynb | 6 +- graphrag/config/defaults.py | 2 +- poetry.lock | 6301 ----------------- pyproject.toml | 198 +- scripts/semver-check.sh | 2 +- tests/fixtures/min-csv/config.json | 4 +- tests/smoke/test_fixtures.py | 4 +- unified-search-app/Dockerfile | 7 +- unified-search-app/README.md | 10 +- unified-search-app/poetry.lock | 4662 ------------ unified-search-app/pyproject.toml | 50 +- unified-search-app/uv.lock | 2988 ++++++++ uv.lock | 4166 +++++++++++ 28 files changed, 7407 insertions(+), 11270 deletions(-) create mode 100644 .semversioner/next-release/minor-20250728163653403774.json delete mode 100644 poetry.lock delete mode 100644 unified-search-app/poetry.lock create mode 100644 unified-search-app/uv.lock create mode 100644 uv.lock diff --git a/.github/workflows/gh-pages.yml b/.github/workflows/gh-pages.yml index 99d46136..5f371f92 100644 --- a/.github/workflows/gh-pages.yml +++ b/.github/workflows/gh-pages.yml @@ -6,8 +6,7 @@ permissions: contents: write env: - POETRY_VERSION: '1.8.3' - PYTHON_VERSION: '3.11' + PYTHON_VERSION: "3.11" jobs: build: @@ -29,18 +28,16 @@ jobs: with: python-version: ${{ env.PYTHON_VERSION }} - - name: Install Poetry ${{ env.POETRY_VERSION }} - uses: abatilo/actions-poetry@v3.0.0 - with: - poetry-version: ${{ env.POETRY_VERSION }} + - name: Install uv + uses: astral-sh/setup-uv@v6 - - name: poetry intsall + - name: Install dependencies shell: bash - run: poetry install + run: uv sync --extra dev - name: mkdocs build shell: bash - run: poetry run poe build_docs + run: uv run poe build_docs - name: List Docsite Contents run: find site diff --git a/.github/workflows/python-ci.yml b/.github/workflows/python-ci.yml index 54862e9f..30cf132d 100644 --- a/.github/workflows/python-ci.yml +++ b/.github/workflows/python-ci.yml @@ -26,9 +26,6 @@ concurrency: # Only run the for the latest commit cancel-in-progress: true -env: - POETRY_VERSION: 1.8.3 - jobs: python-ci: # skip draft PRs @@ -51,7 +48,7 @@ jobs: filters: | python: - 'graphrag/**/*' - - 'poetry.lock' + - 'uv.lock' - 'pyproject.toml' - '**/*.py' - '**/*.toml' @@ -64,30 +61,27 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Install Poetry - uses: abatilo/actions-poetry@v3.0.0 - with: - poetry-version: $POETRY_VERSION + - name: Install uv + uses: astral-sh/setup-uv@v6 - name: Install dependencies shell: bash run: | - poetry self add setuptools wheel - poetry run python -m pip install gensim - poetry install + uv sync --extra dev + uv pip install gensim - name: Check run: | - poetry run poe check + uv run poe check - name: Build run: | - poetry build + uv build - name: Unit Test run: | - poetry run poe test_unit + uv run poe test_unit - name: Verb Test run: | - poetry run poe test_verbs \ No newline at end of file + uv run poe test_verbs diff --git a/.github/workflows/python-integration-tests.yml b/.github/workflows/python-integration-tests.yml index 238d32c6..e38f1bd3 100644 --- a/.github/workflows/python-integration-tests.yml +++ b/.github/workflows/python-integration-tests.yml @@ -26,9 +26,6 @@ concurrency: # only run the for the latest commit cancel-in-progress: true -env: - POETRY_VERSION: 1.8.3 - jobs: python-ci: # skip draft PRs @@ -51,7 +48,7 @@ jobs: filters: | python: - 'graphrag/**/*' - - 'poetry.lock' + - 'uv.lock' - 'pyproject.toml' - '**/*.py' - '**/*.toml' @@ -64,25 +61,24 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Install Poetry - uses: abatilo/actions-poetry@v3.0.0 - with: - poetry-version: $POETRY_VERSION + - name: Install uv + uses: astral-sh/setup-uv@v6 - name: Install dependencies shell: bash run: | - poetry self add setuptools wheel - poetry run python -m pip install gensim - poetry install + uv sync --extra dev + uv pip install gensim - name: Build run: | - poetry build + uv build - - name: Install Azurite - id: azuright - uses: potatoqualitee/azuright@v1.1 + - name: Install and start Azurite + shell: bash + run: | + npm install -g azurite + azurite --silent --skipApiVersionCheck --location /tmp/azurite --debug /tmp/azurite-debug.log & # For more information on installation/setup of Azure Cosmos DB Emulator # https://learn.microsoft.com/en-us/azure/cosmos-db/how-to-develop-emulator?tabs=docker-linux%2Cpython&pivots=api-nosql @@ -97,4 +93,4 @@ jobs: - name: Integration Test run: | - poetry run poe test_integration + uv run poe test_integration diff --git a/.github/workflows/python-notebook-tests.yml b/.github/workflows/python-notebook-tests.yml index 8134b748..41969049 100644 --- a/.github/workflows/python-notebook-tests.yml +++ b/.github/workflows/python-notebook-tests.yml @@ -26,9 +26,6 @@ concurrency: # Only run the for the latest commit cancel-in-progress: true -env: - POETRY_VERSION: 1.8.3 - jobs: python-ci: # skip draft PRs @@ -54,7 +51,7 @@ jobs: filters: | python: - 'graphrag/**/*' - - 'poetry.lock' + - 'uv.lock' - 'pyproject.toml' - '**/*.py' - '**/*.toml' @@ -66,18 +63,15 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Install Poetry - uses: abatilo/actions-poetry@v3.0.0 - with: - poetry-version: $POETRY_VERSION + - name: Install uv + uses: astral-sh/setup-uv@v6 - name: Install dependencies shell: bash run: | - poetry self add setuptools wheel - poetry run python -m pip install gensim - poetry install + uv sync --extra dev + uv pip install gensim - name: Notebook Test run: | - poetry run poe test_notebook + uv run poe test_notebook diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml index f9fcce22..b7382250 100644 --- a/.github/workflows/python-publish.yml +++ b/.github/workflows/python-publish.yml @@ -6,7 +6,6 @@ on: branches: [main] env: - POETRY_VERSION: "1.8.3" PYTHON_VERSION: "3.10" jobs: @@ -31,21 +30,19 @@ jobs: with: python-version: ${{ env.PYTHON_VERSION }} - - name: Install Poetry - uses: abatilo/actions-poetry@v3.0.0 - with: - poetry-version: ${{ env.POETRY_VERSION }} + - name: Install uv + uses: astral-sh/setup-uv@v6 - name: Install dependencies shell: bash - run: poetry install + run: uv sync - name: Export Publication Version - run: echo "version=`poetry version --short`" >> $GITHUB_OUTPUT + run: echo "version=$(uv version --short)" >> $GITHUB_OUTPUT - name: Build Distributable shell: bash - run: poetry build + run: uv build - name: Publish package distributions to PyPI uses: pypa/gh-action-pypi-publish@release/v1 diff --git a/.github/workflows/python-smoke-tests.yml b/.github/workflows/python-smoke-tests.yml index e1c41af2..0c4bf044 100644 --- a/.github/workflows/python-smoke-tests.yml +++ b/.github/workflows/python-smoke-tests.yml @@ -26,9 +26,6 @@ concurrency: # Only run the for the latest commit cancel-in-progress: true -env: - POETRY_VERSION: 1.8.3 - jobs: python-ci: # skip draft PRs @@ -68,7 +65,7 @@ jobs: filters: | python: - 'graphrag/**/*' - - 'poetry.lock' + - 'uv.lock' - 'pyproject.toml' - '**/*.py' - '**/*.toml' @@ -81,33 +78,32 @@ jobs: with: python-version: ${{ matrix.python-version }} - - name: Install Poetry - uses: abatilo/actions-poetry@v3.0.0 - with: - poetry-version: $POETRY_VERSION + - name: Install uv + uses: astral-sh/setup-uv@v6 - name: Install dependencies shell: bash run: | - poetry self add setuptools wheel - poetry run python -m pip install gensim - poetry install + uv sync --extra dev + uv pip install gensim - name: Build run: | - poetry build + uv build - - name: Install Azurite - id: azuright - uses: potatoqualitee/azuright@v1.1 + - name: Install and start Azurite + shell: bash + run: | + npm install -g azurite + azurite --silent --skipApiVersionCheck --location /tmp/azurite --debug /tmp/azurite-debug.log & - name: Smoke Test if: steps.changes.outputs.python == 'true' run: | - poetry run poe test_smoke + uv run poe test_smoke - uses: actions/upload-artifact@v4 if: always() with: - name: smoke-test-artifacts-${{ matrix.python-version }}-${{ matrix.poetry-version }}-${{ runner.os }} + name: smoke-test-artifacts-${{ matrix.python-version }}-${{ runner.os }} path: tests/fixtures/* diff --git a/.gitignore b/.gitignore index 707bc447..f050557b 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,8 @@ # Python Artifacts python/*/lib/ dist/ +build/ +*.egg-info/ # Test Output .coverage diff --git a/.semversioner/next-release/minor-20250728163653403774.json b/.semversioner/next-release/minor-20250728163653403774.json new file mode 100644 index 00000000..2dde1f42 --- /dev/null +++ b/.semversioner/next-release/minor-20250728163653403774.json @@ -0,0 +1,4 @@ +{ + "type": "minor", + "description": "swap package management from Poetry -> UV" +} diff --git a/.vscode/launch.json b/.vscode/launch.json index 21670639..944b77dd 100644 --- a/.vscode/launch.json +++ b/.vscode/launch.json @@ -6,7 +6,7 @@ "name": "Indexer", "type": "debugpy", "request": "launch", - "module": "poetry", + "module": "uv", "args": [ "poe", "index", "--root", "" @@ -16,7 +16,7 @@ "name": "Query", "type": "debugpy", "request": "launch", - "module": "poetry", + "module": "uv", "args": [ "poe", "query", "--root", "", @@ -28,7 +28,7 @@ "name": "Prompt Tuning", "type": "debugpy", "request": "launch", - "module": "poetry", + "module": "uv", "args": [ "poe", "prompt-tune", "--config", diff --git a/.vscode/settings.json b/.vscode/settings.json index 0b678d5d..57eb263e 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,43 +1,8 @@ { - "search.exclude": { - "**/.yarn": true, - "**/.pnp.*": true - }, "editor.formatOnSave": false, - "eslint.nodePath": ".yarn/sdks", - "typescript.tsdk": ".yarn/sdks/typescript/lib", - "typescript.enablePromptUseWorkspaceTsdk": true, - "javascript.preferences.importModuleSpecifier": "relative", - "javascript.preferences.importModuleSpecifierEnding": "js", - "typescript.preferences.importModuleSpecifier": "relative", - "typescript.preferences.importModuleSpecifierEnding": "js", "explorer.fileNesting.enabled": true, - "explorer.fileNesting.patterns": { - "*.ts": "${capture}.ts, ${capture}.hooks.ts, ${capture}.hooks.tsx, ${capture}.contexts.ts, ${capture}.stories.tsx, ${capture}.story.tsx, ${capture}.spec.tsx, ${capture}.base.ts, ${capture}.base.tsx, ${capture}.types.ts, ${capture}.styles.ts, ${capture}.styles.tsx, ${capture}.utils.ts, ${capture}.utils.tsx, ${capture}.constants.ts, ${capture}.module.scss, ${capture}.module.css, ${capture}.md", - "*.js": "${capture}.js.map, ${capture}.min.js, ${capture}.d.ts", - "*.jsx": "${capture}.js", - "*.tsx": "${capture}.ts, ${capture}.hooks.ts, ${capture}.hooks.tsx, ${capture}.contexts.ts, ${capture}.stories.tsx, ${capture}.story.tsx, ${capture}.spec.tsx, ${capture}.base.ts, ${capture}.base.tsx, ${capture}.types.ts, ${capture}.styles.ts, ${capture}.styles.tsx, ${capture}.utils.ts, ${capture}.utils.tsx, ${capture}.constants.ts, ${capture}.module.scss, ${capture}.module.css, ${capture}.md, ${capture}.css", - "tsconfig.json": "tsconfig.*.json", - "package.json": "package-lock.json, turbo.json, tsconfig.json, rome.json, biome.json, .npmignore, dictionary.txt, cspell.config.yaml", - "README.md": "*.md, LICENSE, CODEOWNERS", - ".eslintrc": ".eslintignore", - ".prettierrc": ".prettierignore", - ".gitattributes": ".gitignore", - ".yarnrc.yml": "yarn.lock, .pnp.*", - "jest.config.js": "jest.setup.mjs", - "pyproject.toml": "poetry.lock, poetry.toml, mkdocs.yaml", - "cspell.config.yaml": "dictionary.txt" - }, - "azureFunctions.postDeployTask": "npm install (functions)", - "azureFunctions.projectLanguage": "TypeScript", - "azureFunctions.projectRuntime": "~4", "debug.internalConsoleOptions": "neverOpen", - "azureFunctions.preDeployTask": "npm prune (functions)", - "appService.zipIgnorePattern": [ - "node_modules{,/**}", - ".vscode{,/**}" - ], - "python.defaultInterpreterPath": "python/services/.venv/bin/python", + "python.defaultInterpreterPath": "${workspaceRoot}/.venv/bin/python", "python.languageServer": "Pylance", "cSpell.customDictionaries": { "project-words": { diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 5f01e4bc..37d33817 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -22,7 +22,7 @@ or contact [opencode@microsoft.com](mailto:opencode@microsoft.com) with any addi 2. Create a new branch for your contribution: `git checkout -b my-contribution`. 3. Make your changes and ensure that the code passes all tests. 4. Commit your changes: `git commit -m "Add my contribution"`. -5. Create and commit a semver impact document by running `poetry run semversioner add-change -t -d `. +5. Create and commit a semver impact document by running `uv run semversioner add-change -t -d `. 6. Push your changes to your forked repository: `git push origin my-contribution`. 7. Open a pull request to the main repository. diff --git a/DEVELOPING.md b/DEVELOPING.md index 5fb84594..87a69707 100644 --- a/DEVELOPING.md +++ b/DEVELOPING.md @@ -5,29 +5,33 @@ | Name | Installation | Purpose | | ------------------- | ------------------------------------------------------------ | ----------------------------------------------------------------------------------- | | Python 3.10 or 3.11 | [Download](https://www.python.org/downloads/) | The library is Python-based. | -| Poetry | [Instructions](https://python-poetry.org/docs/#installation) | Poetry is used for package management and virtualenv management in Python codebases | +| uv | [Instructions](https://docs.astral.sh/uv/) | uv is used for package management and virtualenv management in Python codebases | # Getting Started ## Install Dependencies ```shell +# (optional) create virtual environment +uv venv --python 3.10 +source .venv/bin/activate + # install python dependencies -poetry install +uv sync --extra dev ``` ## Execute the indexing engine ```shell -poetry run poe index <...args> +uv run poe index <...args> ``` ## Execute prompt tuning ```shell -poetry run poe prompt_tune <...args> +uv run poe prompt_tune <...args> ``` ## Execute Queries ```shell -poetry run poe query <...args> +uv run poe query <...args> ``` ## Repository Structure @@ -63,7 +67,7 @@ Where appropriate, the factories expose a registration method for users to provi We use [semversioner](https://github.com/raulgomis/semversioner) to automate and enforce semantic versioning in the release process. Our CI/CD pipeline checks that all PR's include a json file generated by semversioner. When submitting a PR, please run: ```shell -poetry run semversioner add-change -t patch -d "." +uv run semversioner add-change -t patch -d "." ``` # Azurite @@ -78,29 +82,29 @@ or by simply running `azurite` in the terminal if already installed globally. Se # Lifecycle Scripts -Our Python package utilizes Poetry to manage dependencies and [poethepoet](https://pypi.org/project/poethepoet/) to manage custom build scripts. +Our Python package utilizes uv to manage dependencies and [poethepoet](https://pypi.org/project/poethepoet/) to manage custom build scripts. Available scripts are: -- `poetry run poe index` - Run the Indexing CLI -- `poetry run poe query` - Run the Query CLI -- `poetry build` - This invokes `poetry build`, which will build a wheel file and other distributable artifacts. -- `poetry run poe test` - This will execute all tests. -- `poetry run poe test_unit` - This will execute unit tests. -- `poetry run poe test_integration` - This will execute integration tests. -- `poetry run poe test_smoke` - This will execute smoke tests. -- `poetry run poe check` - This will perform a suite of static checks across the package, including: +- `uv run poe index` - Run the Indexing CLI +- `uv run poe query` - Run the Query CLI +- `uv build` - This invokes `uv build`, which will build a wheel file and other distributable artifacts. +- `uv run poe test` - This will execute all tests. +- `uv run poe test_unit` - This will execute unit tests. +- `uv run poe test_integration` - This will execute integration tests. +- `uv run poe test_smoke` - This will execute smoke tests. +- `uv run poe check` - This will perform a suite of static checks across the package, including: - formatting - documentation formatting - linting - security patterns - type-checking -- `poetry run poe fix` - This will apply any available auto-fixes to the package. Usually this is just formatting fixes. -- `poetry run poe fix_unsafe` - This will apply any available auto-fixes to the package, including those that may be unsafe. -- `poetry run poe format` - Explicitly run the formatter across the package. +- `uv run poe fix` - This will apply any available auto-fixes to the package. Usually this is just formatting fixes. +- `uv run poe fix_unsafe` - This will apply any available auto-fixes to the package, including those that may be unsafe. +- `uv run poe format` - Explicitly run the formatter across the package. ## Troubleshooting -### "RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config" when running poetry install +### "RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config" when running uv sync Make sure llvm-9 and llvm-9-dev are installed: @@ -110,7 +114,7 @@ and then in your bashrc, add `export LLVM_CONFIG=/usr/bin/llvm-config-9` -### "numba/\_pymodule.h:6:10: fatal error: Python.h: No such file or directory" when running poetry install +### "numba/\_pymodule.h:6:10: fatal error: Python.h: No such file or directory" when running uv sync Make sure you have python3.10-dev installed or more generally `python-dev` diff --git a/docs/developing.md b/docs/developing.md index b143b593..9f9db34a 100644 --- a/docs/developing.md +++ b/docs/developing.md @@ -5,27 +5,31 @@ | Name | Installation | Purpose | | ------------------- | ------------------------------------------------------------ | ----------------------------------------------------------------------------------- | | Python 3.10-3.12 | [Download](https://www.python.org/downloads/) | The library is Python-based. | -| Poetry | [Instructions](https://python-poetry.org/docs/#installation) | Poetry is used for package management and virtualenv management in Python codebases | +| uv | [Instructions](https://docs.astral.sh/uv/) | uv is used for package management and virtualenv management in Python codebases | # Getting Started ## Install Dependencies ```sh -# Install Python dependencies. -poetry install +# (optional) create virtual environment +uv venv --python 3.10 +source .venv/bin/activate + +# install python dependencies +uv sync --extra dev ``` ## Execute the Indexing Engine ```sh -poetry run poe index <...args> +uv run poe index <...args> ``` ## Executing Queries ```sh -poetry run poe query <...args> +uv run poe query <...args> ``` # Azurite @@ -40,31 +44,31 @@ or by simply running `azurite` in the terminal if already installed globally. Se # Lifecycle Scripts -Our Python package utilizes Poetry to manage dependencies and [poethepoet](https://pypi.org/project/poethepoet/) to manage build scripts. +Our Python package utilize uv to manage dependencies and [poethepoet](https://pypi.org/project/poethepoet/) to manage build scripts. Available scripts are: -- `poetry run poe index` - Run the Indexing CLI -- `poetry run poe query` - Run the Query CLI -- `poetry build` - This invokes `poetry build`, which will build a wheel file and other distributable artifacts. -- `poetry run poe test` - This will execute all tests. -- `poetry run poe test_unit` - This will execute unit tests. -- `poetry run poe test_integration` - This will execute integration tests. -- `poetry run poe test_smoke` - This will execute smoke tests. -- `poetry run poe test_verbs` - This will execute tests of the basic workflows. -- `poetry run poe check` - This will perform a suite of static checks across the package, including: +- `uv run poe index` - Run the Indexing CLI +- `uv run poe query` - Run the Query CLI +- `uv build` - This will build a wheel file and other distributable artifacts. +- `uv run poe test` - This will execute all tests. +- `uv run poe test_unit` - This will execute unit tests. +- `uv run poe test_integration` - This will execute integration tests. +- `uv run poe test_smoke` - This will execute smoke tests. +- `uv run poe test_verbs` - This will execute tests of the basic workflows. +- `uv run poe check` - This will perform a suite of static checks across the package, including: - formatting - documentation formatting - linting - security patterns - type-checking -- `poetry run poe fix` - This will apply any available auto-fixes to the package. Usually this is just formatting fixes. -- `poetry run poe fix_unsafe` - This will apply any available auto-fixes to the package, including those that may be unsafe. -- `poetry run poe format` - Explicitly run the formatter across the package. +- `uv run poe fix` - This will apply any available auto-fixes to the package. Usually this is just formatting fixes. +- `uv run poe fix_unsafe` - This will apply any available auto-fixes to the package, including those that may be unsafe. +- `uv run poe format` - Explicitly run the formatter across the package. ## Troubleshooting -### "RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config" when running poetry install +### "RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config" when running uv install Make sure llvm-9 and llvm-9-dev are installed: @@ -74,12 +78,6 @@ and then in your bashrc, add `export LLVM_CONFIG=/usr/bin/llvm-config-9` -### "numba/\_pymodule.h:6:10: fatal error: Python.h: No such file or directory" when running poetry install - -Make sure you have python3.10-dev installed or more generally `python-dev` - -`sudo apt-get install python3.10-dev` - ### LLM call constantly exceeds TPM, RPM or time limits `GRAPHRAG_LLM_THREAD_COUNT` and `GRAPHRAG_EMBEDDING_THREAD_COUNT` are both set to 50 by default. You can modify these values diff --git a/docs/examples_notebooks/index_migration_to_v1.ipynb b/docs/examples_notebooks/index_migration_to_v1.ipynb index 79d9685c..ecff5192 100644 --- a/docs/examples_notebooks/index_migration_to_v1.ipynb +++ b/docs/examples_notebooks/index_migration_to_v1.ipynb @@ -202,10 +202,11 @@ "metadata": {}, "outputs": [], "source": [ + "from graphrag.index.flows.generate_text_embeddings import generate_text_embeddings\n", + "\n", "from graphrag.cache.factory import CacheFactory\n", "from graphrag.callbacks.noop_workflow_callbacks import NoopWorkflowCallbacks\n", "from graphrag.config.embeddings import get_embedded_fields, get_embedding_settings\n", - "from graphrag.index.flows.generate_text_embeddings import generate_text_embeddings\n", "\n", "# We only need to re-run the embeddings workflow, to ensure that embeddings for all required search fields are in place\n", "# We'll construct the context and run this function flow directly to avoid everything else\n", diff --git a/docs/index/overview.md b/docs/index/overview.md index 171750ab..550909f6 100644 --- a/docs/index/overview.md +++ b/docs/index/overview.md @@ -26,8 +26,7 @@ After you have a config file you can run the pipeline using the CLI or the Pytho ### CLI ```bash -# Via Poetry -poetry run poe index --root # default config mode +uv run poe index --root # default config mode ``` ### Python API diff --git a/examples_notebooks/community_contrib/yfiles-jupyter-graphs/graph-visualization.ipynb b/examples_notebooks/community_contrib/yfiles-jupyter-graphs/graph-visualization.ipynb index bbf000f3..fb53287b 100644 --- a/examples_notebooks/community_contrib/yfiles-jupyter-graphs/graph-visualization.ipynb +++ b/examples_notebooks/community_contrib/yfiles-jupyter-graphs/graph-visualization.ipynb @@ -29,6 +29,9 @@ "\n", "import pandas as pd\n", "import tiktoken\n", + "from graphrag.query.llm.oai.chat_openai import ChatOpenAI\n", + "from graphrag.query.llm.oai.embedding import OpenAIEmbedding\n", + "from graphrag.query.llm.oai.typing import OpenaiApiType\n", "\n", "from graphrag.query.context_builder.entity_extraction import EntityVectorStoreKey\n", "from graphrag.query.indexer_adapters import (\n", @@ -38,9 +41,6 @@ " read_indexer_reports,\n", " read_indexer_text_units,\n", ")\n", - 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"Kate Lytvynets ", - "Kenny Zhang ", - "Mónica Carvajal", - "Nathan Evans ", - "Rodrigo Racanicci ", - "Sarah Smith ", + {name = "Alonso Guevara Fernández", email = "alonsog@microsoft.com"}, + {name = "Andrés Morales Esquivel", email = "andresmor@microsoft.com"}, + {name = "Chris Trevino", email = "chtrevin@microsoft.com"}, + {name = "David Tittsworth", email = "datittsw@microsoft.com"}, + {name = "Dayenne de Souza", email = "ddesouza@microsoft.com"}, + {name = "Derek Worthen", email = "deworthe@microsoft.com"}, + {name = "Gaudy Blanco Meneses", email = "gaudyb@microsoft.com"}, + {name = "Ha Trinh", email = "trinhha@microsoft.com"}, + {name = "Jonathan Larson", email = "jolarso@microsoft.com"}, + {name = "Josh Bradley", email = "joshbradley@microsoft.com"}, + {name = "Kate Lytvynets", email = "kalytv@microsoft.com"}, + {name = "Kenny Zhang", email = "zhangken@microsoft.com"}, + {name = "Mónica Carvajal"}, + {name = "Nathan Evans", email = "naevans@microsoft.com"}, + {name = "Rodrigo Racanicci", email = "rracanicci@microsoft.com"}, + {name = "Sarah Smith", email = "smithsarah@microsoft.com"}, ] license = "MIT" readme = "README.md" -packages = [{ include = "graphrag" }] +requires-python = ">=3.10,<3.13" +classifiers = [ + "Programming Language :: Python :: 3", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", +] -[tool.poetry.urls] -"Source" = "https://github.com/microsoft/graphrag" +dependencies = [ + "environs>=11.0.0", + # Vector Stores + "azure-search-documents>=11.5.2", + "lancedb>=0.17.0", + # Async IO + "aiofiles>=24.1.0", + # LLM + "fnllm[azure,openai]>=0.3.0", + "json-repair>=0.30.3", + "openai>=1.68.0", + "nltk==3.9.1", + "tiktoken>=0.9.0", + # Data-Science + "numpy>=1.25.2", + "graspologic>=3.4.1", + "networkx>=3.4.2", + "pandas>=2.2.3", + "pyarrow>=17.0.0", + "umap-learn>=0.5.6", + # Configuration + "pyyaml>=6.0.2", + "python-dotenv>=1.0.1", + "pydantic>=2.10.3", + "devtools>=0.12.2", + "typing-extensions>=4.12.2", + # Azure + "azure-cosmos>=4.9.0", + "azure-identity>=1.19.0", + "azure-storage-blob>=12.24.0", + "future>=1.0.0", # Needed until graspologic fixes their dependency + "typer>=0.16.0", + "tqdm>=4.67.1", + "textblob>=0.18.0.post0", + "spacy>=3.8.4", +] -[tool.poetry.scripts] +[project.optional-dependencies] +dev = [ + "coverage>=7.6.9", + "ipykernel>=6.29.5", + "jupyter>=1.1.1", + "nbconvert>=7.16.4", + "poethepoet>=0.31.1", + "pyright>=1.1.390", + "pytest>=8.3.4", + "pytest-asyncio>=0.24.0", + "pytest-timeout>=2.3.1", + "ruff>=0.8.2", + "semversioner>=2.0.5", + "update-toml>=0.2.1", + "deptry>=0.21.1", + "mkdocs-material>=9.5.48", + "mkdocs-jupyter>=0.25.1", + "mkdocs-exclude-search>=0.6.6", + "pytest-dotenv>=0.5.2", + "mkdocs-typer>=0.0.3", +] + +[project.scripts] graphrag = "graphrag.cli.main:app" -[tool.poetry-dynamic-versioning] -enable = true -style = "pep440" -vcs = "git" -bump = true -format-jinja = """ - {%- if distance == 0 -%} - {{ serialize_pep440(base, stage, revision) }} - {%- else -%} - {{ serialize_pep440(base, stage, revision, dev=distance) }} - {%- endif -%} -""" - -[tool.poetry.dependencies] -python = ">=3.10,<3.13" -environs = "^11.0.0" - -# Vector Stores -azure-search-documents = "^11.5.2" -lancedb = "^0.17.0" - -# Async IO -aiofiles = "^24.1.0" - -# LLM -fnllm = {extras = ["azure", "openai"], version = "^0.3.0"} -json-repair = "^0.30.3" -openai = "^1.68.0" -nltk = "3.9.1" -tiktoken = "^0.9.0" - -# Data-Science -numpy = "^1.25.2" -graspologic = "^3.4.1" -networkx = "^3.4.2" -pandas = "^2.2.3" -pyarrow = ">=17.0.0" -umap-learn = "^0.5.6" - -# Configuration -pyyaml = "^6.0.2" -python-dotenv = "^1.0.1" - -pydantic = "^2.10.3" -devtools = "^0.12.2" -typing-extensions = "^4.12.2" - -# Azure -azure-cosmos = "^4.9.0" -azure-identity = "^1.19.0" -azure-storage-blob = "^12.24.0" - -future = "^1.0.0" # Needed until graspologic fixes their dependency -typer = "^0.16.0" -tqdm = "^4.67.1" - -textblob = "^0.18.0.post0" -spacy = "^3.8.4" - -[tool.poetry.group.dev.dependencies] -coverage = "^7.6.9" -ipykernel = "^6.29.5" -jupyter = "^1.1.1" -nbconvert = "^7.16.4" -poethepoet = "^0.31.1" -pyright = "^1.1.390" -pytest = "^8.3.4" -pytest-asyncio = "^0.24.0" -pytest-timeout = "^2.3.1" -ruff = "^0.8.2" -semversioner = "^2.0.5" -update-toml = "^0.2.1" -deptry = "^0.21.1" -mkdocs-material = "^9.5.48" -mkdocs-jupyter = "^0.25.1" -mkdocs-exclude-search = "^0.6.6" -pytest-dotenv = "^0.5.2" -mkdocs-typer = "^0.0.3" +[project.urls] +Source = "https://github.com/microsoft/graphrag" [build-system] -requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"] -build-backend = "poetry_dynamic_versioning.backend" +requires = ["setuptools>=64", "wheel"] +build-backend = "setuptools.build_meta" +[tool.setuptools.packages.find] +include = ["graphrag*"] +exclude = ["examples_notebooks*", "tests*"] + +# Keep poethepoet for task management to minimize changes [tool.poe.tasks] _sort_imports = "ruff check --select I --fix ." _format_code = "ruff format ." @@ -123,7 +114,7 @@ _convert_local_search_nb = 'jupyter nbconvert --output-dir=docsite/posts/query/n _convert_global_search_nb = 'jupyter nbconvert --output-dir=docsite/posts/query/notebooks/ --output="{notebook_name}_nb" --template=docsite/nbdocsite_template --to markdown examples_notebooks/global_search.ipynb' _semversioner_release = "semversioner release" _semversioner_changelog = "semversioner changelog > CHANGELOG.md" -_semversioner_update_toml_version = "update-toml update --path tool.poetry.version --value $(poetry run semversioner current-version)" +_semversioner_update_toml_version = "update-toml update --path project.version --value $(semversioner current-version)" semversioner_add = "semversioner add-change" coverage_report = 'coverage report --omit "**/tests/**" --show-missing' check_format = 'ruff format . --check' @@ -169,6 +160,7 @@ ignore_fail = 'return_non_zero' sequence = ['_test_all', 'coverage_report'] ignore_fail = 'return_non_zero' +# Keep all existing tool configurations [tool.ruff] target-version = "py310" extend-include = ["*.ipynb"] @@ -267,4 +259,4 @@ exclude = ["**/node_modules", "**/__pycache__"] asyncio_default_fixture_loop_scope = "function" asyncio_mode = "auto" timeout = 1000 -env_files = [".env"] +env_files = [".env"] \ No newline at end of file diff --git a/scripts/semver-check.sh b/scripts/semver-check.sh index 26d69f9b..a6bc041f 100755 --- a/scripts/semver-check.sh +++ b/scripts/semver-check.sh @@ -4,7 +4,7 @@ has_change_doc=$(echo $changes | grep .semversioner/next-release) has_impacting_changes=$(echo $changes | grep graphrag) if [ "$has_impacting_changes" ] && [ -z "$has_change_doc" ]; then - echo "Check failed. Run 'poetry run semversioner add-change' to update the next release version" + echo "Check failed. Run 'uv run semversioner add-change' to update the next release version" exit 1 fi echo "OK" diff --git a/tests/fixtures/min-csv/config.json b/tests/fixtures/min-csv/config.json index 8ef26786..ed9b09af 100644 --- a/tests/fixtures/min-csv/config.json +++ b/tests/fixtures/min-csv/config.json @@ -32,7 +32,7 @@ "create_communities": { "row_range": [ 10, - 30 + 35 ], "max_runtime": 30, "expected_artifacts": ["communities.parquet"] @@ -40,7 +40,7 @@ "create_community_reports": { "row_range": [ 10, - 30 + 35 ], "nan_allowed_columns": [ "title", diff --git a/tests/smoke/test_fixtures.py b/tests/smoke/test_fixtures.py index acb90127..c6825a25 100644 --- a/tests/smoke/test_fixtures.py +++ b/tests/smoke/test_fixtures.py @@ -130,7 +130,7 @@ class TestIndexer: input_file_type: str, ): command = [ - "poetry", + "uv", "run", "poe", "index", @@ -202,7 +202,7 @@ class TestIndexer: def __run_query(self, root: Path, query_config: dict[str, str]): command = [ - "poetry", + "uv", "run", "poe", "query", diff --git a/unified-search-app/Dockerfile b/unified-search-app/Dockerfile index d4c8c872..8ce5d376 100644 --- a/unified-search-app/Dockerfile +++ b/unified-search-app/Dockerfile @@ -10,11 +10,10 @@ RUN apt-get update -y # Install dependencies WORKDIR ./ COPY . . -RUN curl -sSL https://install.python-poetry.org | python - +RUN curl -LsSf https://astral.sh/uv/install.sh | sh ENV PATH="${PATH}:/root/.local/bin" -RUN poetry config virtualenvs.in-project true -RUN poetry install --no-root +RUN uv sync --no-install-project # Run application EXPOSE 8501 -ENTRYPOINT ["poetry","run","streamlit", "run", "./app/home_page.py"] \ No newline at end of file +ENTRYPOINT ["uv","run","poe","start_prod"] \ No newline at end of file diff --git a/unified-search-app/README.md b/unified-search-app/README.md index 00208b9a..a7097e94 100644 --- a/unified-search-app/README.md +++ b/unified-search-app/README.md @@ -5,14 +5,14 @@ Unified demo for GraphRAG search comparisons. ## Requirements: - Python 3.11 -- Poetry +- UV This sample app is not published to pypi, so you'll need to clone the GraphRAG repo and run from this folder. We recommend always using a virtual environment: -- `python -m venv ./venv` -- `source ./venv/bin/activate` +- `uv venv --python 3.11` +- `source .venv/bin/activate` ## Run index Use GraphRAG to index your dataset before running Unified Search. We recommend starting with the [Getting Started guide](https://microsoft.github.io/graphrag/get_started/). You need to run GraphRAG indexing with graph embedding umap enabled to use the functionalities of Unified Search. @@ -91,9 +91,9 @@ You can host Unified Search datasets locally or in a blob. # Run the app -Install all the dependencies: `poetry install` +Install all the dependencies: `uv sync --extra dev` -Run the project using streamlit: `poetry run poe start` +Run the project using streamlit: `uv run poe start` # How to use it diff --git a/unified-search-app/poetry.lock b/unified-search-app/poetry.lock deleted file mode 100644 index 4351ccf1..00000000 --- a/unified-search-app/poetry.lock +++ /dev/null @@ -1,4662 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. - -[[package]] -name = "aiofiles" -version = "24.1.0" -description = "File support for asyncio." -optional = false -python-versions = ">=3.8" -files = [ - {file = "aiofiles-24.1.0-py3-none-any.whl", hash = "sha256:b4ec55f4195e3eb5d7abd1bf7e061763e864dd4954231fb8539a0ef8bb8260e5"}, - 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