mirror of
https://github.com/microsoft/graphrag.git
synced 2026-01-13 16:47:20 +08:00
Use graspologic native hierarchical leiden
This commit is contained in:
Alonso Guevara
parent
1bbce33f42
commit
eefde46b60
@ -61,14 +61,23 @@ def _compute_leiden_communities(
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) -> tuple[dict[int, dict[str, int]], dict[int, int]]:
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"""Return Leiden root communities and their hierarchy mapping."""
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# NOTE: This import is done here to reduce the initial import time of the graphrag package
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from graspologic.partition import hierarchical_leiden
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from graspologic_native import hierarchical_leiden
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# from graspologic.partition import hierarchical_leiden
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if use_lcc:
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graph = stable_largest_connected_component(graph)
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community_mapping = hierarchical_leiden(
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graph, max_cluster_size=max_cluster_size, random_seed=seed
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edges=_nx_to_edge_list(graph),
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max_cluster_size=max_cluster_size,
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seed=seed,
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starting_communities=None,
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resolution=1.0,
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randomness=0.001,
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use_modularity=True,
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iterations=0,
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)
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results: dict[int, dict[str, int]] = {}
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hierarchy: dict[int, int] = {}
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for partition in community_mapping:
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@ -80,3 +89,32 @@ def _compute_leiden_communities(
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)
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return results, hierarchy
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def _nx_to_edge_list(
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graph: nx.Graph,
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weight_attribute: str = "weight",
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weight_default: float = 1.0,
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) -> list[tuple[str, str, float]]:
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"""
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Convert an undirected, non-multigraph networkx graph to a list of edges,
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where each edge is a tuple of (source_str, target_str, weight).
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"""
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# Validate graph type: must be undirected and not a multigraph
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if graph.is_directed() or graph.is_multigraph():
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raise ValueError(
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"Only undirected non-multi-graph networkx graphs are supported."
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)
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edge_list: list[tuple[str, str, float]] = []
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# Decide how to retrieve the weight data
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edge_iter = graph.edges(data=weight_attribute, default=weight_default) # type: ignore
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for source, target, weight in edge_iter:
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source_str = str(source)
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target_str = str(target)
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edge_list.append((source_str, target_str, float(weight)))
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return edge_list
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118
poetry.lock
generated
118
poetry.lock
generated
@ -1,4 +1,4 @@
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# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
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# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand.
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[[package]]
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name = "aiofiles"
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@ -1057,61 +1057,61 @@ openai = ["openai (>=1.35.12)", "tiktoken (>=0.7.0)"]
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[[package]]
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name = "fonttools"
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version = "4.55.3"
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version = "4.55.8"
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description = "Tools to manipulate font files"
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optional = false
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python-versions = ">=3.8"
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files = [
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||||
{file = "fonttools-4.55.8-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:6b8d7c149d47b47de7ec81763396c8266e5ebe2e0b14aa9c3ccf29e52260ab2f"},
|
||||
{file = "fonttools-4.55.8-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4dfae7c94987149bdaa0388e6c937566aa398fa0eec973b17952350a069cff4e"},
|
||||
{file = "fonttools-4.55.8-cp313-cp313-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a0fe12f06169af2fdc642d26a8df53e40adc3beedbd6ffedb19f1c5397b63afd"},
|
||||
{file = "fonttools-4.55.8-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:f971aa5f50c22dc4b63a891503624ae2c77330429b34ead32f23c2260c5618cd"},
|
||||
{file = "fonttools-4.55.8-cp313-cp313-musllinux_1_2_x86_64.whl", hash = "sha256:708cb17b2590b7f6c6854999df0039ff1140dda9e6f56d67c3599ba6f968fab5"},
|
||||
{file = "fonttools-4.55.8-cp313-cp313-win32.whl", hash = "sha256:cfe9cf30f391a0f2875247a3e5e44d8dcb61596e5cf89b360cdffec8a80e9961"},
|
||||
{file = "fonttools-4.55.8-cp313-cp313-win_amd64.whl", hash = "sha256:1e10efc8ee10d6f1fe2931d41bccc90cd4b872f2ee4ff21f2231a2c293b2dbf8"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:9b6fcff4dc755b32faff955d989ee26394ddad3a90ea7d558db17a4633c8390c"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:02c41322e5bdcb484b61b776fcea150215c83619b39c96aa0b44d4fd87bb5574"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9164f44add0acec0f12fce682824c040dc52e483bfe3838c37142897150c8364"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:d2248ebfbcea0d0b3cb459d76a9f67f2eadc10ec0d07e9cadab8777d3f016bf2"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-musllinux_1_2_aarch64.whl", hash = "sha256:3461347016c94cb42b36caa907e11565878c4c2c375604f3651d11dc06d1ab3e"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-musllinux_1_2_x86_64.whl", hash = "sha256:67df1c3935838fb9e56f227d7f506c9043b149a4a3b667bef17929c7a1114d19"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-win32.whl", hash = "sha256:cb121d6dd34625cece32234a5fa0359475bb118838b6b4295ffdb13b935edb04"},
|
||||
{file = "fonttools-4.55.8-cp38-cp38-win_amd64.whl", hash = "sha256:285c1ac10c160fbdff6d05358230e66c4f98cbbf271f3ec7eb34e967771543e8"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:8abd135e427d88e461a4833c03cf96cfb9028c78c15d58123291f22398e25492"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:65cb8f97eed7906dcf19bc2736b70c6239e9d7e77aad7c6110ba7239ae082e81"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:450c354c04a6e12a3db968e915fe05730f79ff3d39560947ef8ee6eaa2ab2212"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2232012a1502b2b8ab4c6bc1d3524bfe90238c0c1a50ac94a0a2085aa87a58a5"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:d39f0c977639be0f9f5505d4c7c478236737f960c567a35f058649c056e41434"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-musllinux_1_2_x86_64.whl", hash = "sha256:de78d6d0dbe32561ce059265437021f4746e56073c4799f0f1095828ae7232bd"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-win32.whl", hash = "sha256:bf4b5b3496ddfdd4e57112e77ec51f1ab388d35ac17322c1248addb2eb0d429a"},
|
||||
{file = "fonttools-4.55.8-cp39-cp39-win_amd64.whl", hash = "sha256:ccf8ae02918f431953d338db4d0a675a395faf82bab3a76025582cf32a2f3b7b"},
|
||||
{file = "fonttools-4.55.8-py3-none-any.whl", hash = "sha256:07636dae94f7fe88561f9da7a46b13d8e3f529f87fdb221b11d85f91eabceeb7"},
|
||||
{file = "fonttools-4.55.8.tar.gz", hash = "sha256:54d481d456dcd59af25d4a9c56b2c4c3f20e9620b261b84144e5950f33e8df17"},
|
||||
]
|
||||
|
||||
[package.extras]
|
||||
@ -1244,15 +1244,15 @@ umap-learn = ">=0.5.6,<0.6.0"
|
||||
|
||||
[[package]]
|
||||
name = "graspologic-native"
|
||||
version = "1.2.1"
|
||||
version = "1.2.3"
|
||||
description = "Python native companion module to the graspologic library"
|
||||
optional = false
|
||||
python-versions = ">=3.6, <3.13"
|
||||
python-versions = "<3.14,>=3.8"
|
||||
files = [
|
||||
{file = "graspologic_native-1.2.1-cp36-abi3-macosx_10_12_x86_64.macosx_11_0_arm64.macosx_10_12_universal2.whl", hash = "sha256:eccb2fa475b604375e34b4ae1d5497a428c34ed65f27888495239f8e120acea1"},
|
||||
{file = "graspologic_native-1.2.1-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a44cfdee11718c01c0f6c544750b3ae64e28cc03432a620fe0295704bd0d618d"},
|
||||
{file = "graspologic_native-1.2.1-cp36-abi3-win_amd64.whl", hash = "sha256:56b5e66ba003fd38efc0919ce90fa22d379456e177dca65e26626498d2b9b96b"},
|
||||
{file = "graspologic_native-1.2.1.tar.gz", hash = "sha256:72b7586028a91e9fef9af0ef314d368f0240c18dca99e6e6c546334359a8610a"},
|
||||
{file = "graspologic_native-1.2.3-cp38-abi3-macosx_10_12_x86_64.macosx_11_0_arm64.macosx_10_12_universal2.whl", hash = "sha256:b2fe41f24fa826dc0c134c7e3c8781090c3056a0000e74ac927b34caca8b3c6b"},
|
||||
{file = "graspologic_native-1.2.3-cp38-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2b25c75c31f7650905b75a7fe01f89bf8e89667bf6fcb1c733b0260599df2d00"},
|
||||
{file = "graspologic_native-1.2.3-cp38-abi3-win_amd64.whl", hash = "sha256:57ded2c8532878ff662888c0397f4909d70fdf0e98d808de707238c67857ab5c"},
|
||||
{file = "graspologic_native-1.2.3.tar.gz", hash = "sha256:7c059f7b580248abc3fee8828b9e97ac48ac9a9554fdeafaa35862871ac5113a"},
|
||||
]
|
||||
|
||||
[[package]]
|
||||
@ -5209,4 +5209,4 @@ files = [
|
||||
[metadata]
|
||||
lock-version = "2.0"
|
||||
python-versions = ">=3.10,<3.13"
|
||||
content-hash = "3359856d17fe2df1cb81270300efa552fff2971e4896480270daedd443695865"
|
||||
content-hash = "521f756d18721ae2443a456deff5981368ce239c2cef94129ed8ae1253789fd1"
|
||||
|
||||
@ -62,7 +62,6 @@ tiktoken = "^0.8.0"
|
||||
|
||||
# Data-Sci
|
||||
numpy = "^1.25.2"
|
||||
graspologic = "^3.4.1"
|
||||
networkx = "^3.4.2"
|
||||
pandas = "^2.2.3"
|
||||
pyarrow = "^15.0.0"
|
||||
@ -90,6 +89,8 @@ tenacity = "^9.0.0"
|
||||
json-repair = "^0.30.3"
|
||||
tqdm = "^4.67.1"
|
||||
httpx = "^0.28.1"
|
||||
graspologic-native = "^1.2.3"
|
||||
graspologic = "^3.4.1"
|
||||
|
||||
[tool.poetry.group.dev.dependencies]
|
||||
coverage = "^7.6.9"
|
||||
|
||||
Loading…
Reference in New Issue
Block a user