Commit Graph

27 Commits

Author SHA1 Message Date
Nathan Evans
ac8a7f5eef
Housekeeping (#2086)
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* Add deprecation warnings for fnllm and multi-search

* Fix dangling token_encoder refs

* Fix local_search notebook

* Fix global search dynamic notebook

* Fix global search notebook

* Fix drift notebook

* Switch example notebooks to use LiteLLM config

* Properly annotate dev deps as a group

* Semver

* Remove --extra dev

* Remove llm_model variable

* Ignore ruff ASYNC240

* Add note about expected broken notebook in docs

* Fix custom vector store notebook

* Push tokenizer throughout
2025-10-07 16:21:24 -07:00
gaudyb
82cd3b7df2
Custom vector store schema implementation (#2062)
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* progress on vector customization

* fix for lancedb vectors

* cosmosdb implementation

* uv run poe format

* clean test for vector store

* semversioner update

* test_factory.py integration test fixes

* fixes for cosmosdb test

* integration test fix for lancedb

* uv fix for format

* test fixes

* fixes for tests

* fix cosmosdb bug

* print statement

* test

* test

* fix cosmosdb bug

* test validation

* validation cosmosdb

* validate cosmosdb

* fix cosmosdb

* fix small feedback from PR

---------

Co-authored-by: Gaudy Blanco <gaudy-microsoft@MacBook-Pro-m4-Gaudy-For-Work.local>
2025-09-19 10:11:34 -07:00
Copilot
2030f94eb4
Refactor CacheFactory, StorageFactory, and VectorStoreFactory to use consistent registration patterns and add custom vector store documentation (#2006)
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* Initial plan

* Refactor VectorStoreFactory to use registration functionality like StorageFactory

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix linting issues in VectorStoreFactory refactoring

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove backward compatibility support from VectorStoreFactory and StorageFactory

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Run ruff check --fix and ruff format, add semversioner file

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* ruff formatting fixes

* Fix pytest errors in storage factory tests by updating PipelineStorage interface implementation

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* ruff formatting fixes

* update storage factory design

* Refactor CacheFactory to use registration functionality like StorageFactory

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* revert copilot changes

* fix copilot changes

* update comments

* Fix failing pytest compatibility for factory tests

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* update class instantiation issue

* ruff fixes

* fix pytest

* add default value

* ruff formatting changes

* ruff fixes

* revert minor changes

* cleanup cache factory

* Update CacheFactory tests to match consistent factory pattern

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* update pytest thresholds

* adjust threshold levels

* Add custom vector store implementation notebook

Create comprehensive notebook demonstrating how to implement and register custom vector stores with GraphRAG as a plug-and-play framework. Includes:

- Complete implementation of SimpleInMemoryVectorStore
- Registration with VectorStoreFactory
- Testing and validation examples
- Configuration examples for GraphRAG settings
- Advanced features and best practices
- Production considerations checklist

The notebook provides a complete walkthrough for developers to understand and implement their own vector store backends.

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* remove sample notebook for now

* update tests

* fix cache pytests

* add pandas-stub to dev dependencies

* disable warning check for well known key

* skip tests when running on ubuntu

* add documentation for custom vector store implementations

* ignore ruff findings in notebooks

* fix merge breakages

* speedup CLI import statements

* remove unnecessary import statements in init file

* Add str type option on storage/cache type

* Fix store name

* Add LoggerFactory

* Fix up logging setup across CLI/API

* Add LoggerFactory test

* Fix err message

* Semver

* Remove enums from factory methods

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>
Co-authored-by: Josh Bradley <joshbradley@microsoft.com>
Co-authored-by: Nathan Evans <github@talkswithnumbers.com>
2025-08-28 13:53:07 -07:00
Copilot
13bf315a35
Refactor StorageFactory class to use registration functionality (#1944)
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* Initial plan for issue

* Refactored StorageFactory to use a registration-based approach

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Added semversioner change record

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix Python CI test failures and improve code quality

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* ruff formatting fixes

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>
Co-authored-by: Josh Bradley <joshbradley@microsoft.com>
2025-07-10 12:08:44 -06:00
Copilot
e84df28e64
Improve internal logging functionality by using Python's standard logging module (#1956)
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* Initial plan for issue

* Implement standard logging module and integrate with existing loggers

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Add test cases and improve documentation for standard logging

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Apply ruff formatting and add semversioner file for logging improvements

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove custom logger classes and refactor to use standard logging only

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Apply ruff formatting to resolve CI/CD test failures

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Add semversioner file and fix linting issues

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* ruff fixes

* fix spelling error

* Remove StandardProgressLogger and refactor to use standard logging

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove LoggerFactory and custom loggers, refactor to use standard logging

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix pyright error: use logger.info() instead of calling logger as function in cosmosdb_pipeline_storage.py

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* ruff fixes

* Remove deprecated logger files that were marked as deprecated placeholders

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Replace custom get_logger with standard Python logging

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix linting issues found by ruff check --fix

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* apply ruff check fixes

* add word to dictionary

* Fix type checker error in ModelManager.__new__ method

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Refactor multiple logging.getLogger() calls to use single logger per file

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove progress_logger parameter from build_index() and logger parameter from generate_indexing_prompts()

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove logger parameter from run_pipeline and standardize logger naming

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Replace logger parameter with log_level parameter in CLI commands

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix import ordering in notebook files to pass poetry poe check

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove --logger parameter from smoke test command

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix Windows CI/CD issue with log file cleanup in tests

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Add StreamHandler to root logger in __main__.py for CLI logging

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Only add StreamHandler if root logger doesn't have existing StreamHandler

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix import ordering in notebook files to pass ruff checks

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Replace logging.StreamHandler with colorlog.StreamHandler for colorized log output

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Regenerate poetry.lock file after adding colorlog dependency

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix import ordering in notebook files to pass ruff checks

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* move printing of dataframes to debug level

* remove colorlog for now

* Refactor workflow callbacks to inherit from logging.Handler

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix linting issues in workflow callback handlers

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix pyright type errors in blob and file workflow callbacks

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Refactor pipeline logging to use pure logging.Handler subclasses

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Rename workflow callback classes to workflow logger classes and move to logger directory

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* update dictionary

* apply ruff fixes

* fix function name

* simplify logger code

* update

* Remove error, warning, and log methods from WorkflowCallbacks and replace with standard logging

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* ruff fixes

* Fix pyright errors by removing WorkflowCallbacks from strategy type signatures

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove ConsoleWorkflowLogger and apply consistent formatter to all handlers

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* apply ruff fixes

* Refactor pipeline_logger.py to use standard FileHandler and remove FileWorkflowLogger

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove conditional azure import checks from blob_workflow_logger.py

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Fix pyright type checking errors in mock_provider.py and utils.py

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Run ruff check --fix to fix import ordering in notebooks

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Merge configure_logging and create_pipeline_logger into init_loggers function

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* Remove configure_logging and create_pipeline_logger functions, replace all usage with init_loggers

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* apply ruff fixes

* cleanup unused code

* Update init_loggers to accept GraphRagConfig instead of ReportingConfig

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* apply ruff check fixes

* Fix test failures by providing valid GraphRagConfig with required model configurations

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* apply ruff fixes

* remove logging_workflow_callback

* cleanup logging messages

* Add logging to track progress of pandas DataFrame apply operation in create_base_text_units

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* cleanup logger logic throughout codebase

* update

* more cleanup of old loggers

* small logger cleanup

* final code cleanup and added loggers to query

* add verbose logging to query

* minor code cleanup

* Fix broken unit tests for chunk_text and standard_logging

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* apply ruff fixes

* Fix test_chunk_text by mocking progress_ticker function instead of ProgressTicker class

Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>

* remove unnecessary logger

* remove rich and fix type annotation

* revert test formatting changes my by copilot

* promote graphrag logs to root logger

* add correct semversioner file

* revert change to file

* revert formatting changes that have no effect

* fix changes after merge with main

* revert unnecessary copilot changes

* remove whitespace

* cleanup docstring

* simplify some logic with less code

* update poetry lock file

* ruff fixes

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: jgbradley1 <654554+jgbradley1@users.noreply.github.com>
Co-authored-by: Josh Bradley <joshbradley@microsoft.com>
2025-07-09 18:29:03 -06:00
Nathan Evans
1df89727c3
Pipeline registration (#1940)
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* Move covariate run conditional

* All pipeline registration

* Fix method name construction

* Rename context storage -> output_storage

* Rename OutputConfig as generic StorageConfig

* Reuse Storage model under InputConfig

* Move input storage creation out of document loading

* Move document loading into workflows

* Semver

* Fix smoke test config for new workflows

* Fix unit tests

---------

Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-06-12 16:14:39 -07:00
Alonso Guevara
7fba9522d4
Task/raw model answer (#1947)
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* Add full_response to llm provider output

* Semver

* Small leftover cleanup

* Add pyi to suppress Pyright errors. full_content is optional

* Format

* Add missing stubs
2025-05-22 08:22:44 -06:00
Nathan Evans
ad4cdd685f
Support OpenAI reasoning models (#1841)
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* Update tiktoken

* Add max_completion_tokens to model config

* Update/remove outdated comments

* Remove max_tokens from report generation

* Remove max_tokens from entity summarization

* Remove logit_bias from graph extraction

* Remove logit_bias from claim extraction

* Swap params if reasoning model

* Add reasoning model support to basic search

* Add reasoning model support for local and global search

* Support reasoning models with dynamic community selection

* Support reasoning models in DRIFT search

* Remove unused num_threads entry

* Semver

* Update openai

* Add reasoning_effort param
2025-04-22 14:15:26 -07:00
KennyZhang1
61769dd47e
Vector Store Integration Tests (#1856)
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* Add vector store id reference to embeddings config.

* generated initial vector store pytests

* cleaned up cosmosdb vector store test

* fixed class name typo and debugged cosmosdb vector store test

* reset emulator connection string

* remove unneccessary comments

* removed extra comments from azure ai search test

* ruff

* semversioner

* fix cicd issues

* bypass diskANN policy for test env

* handle floating point inprecisions

---------

Co-authored-by: Derek Worthen <worthend.derek@gmail.com>
2025-04-01 11:05:04 -04:00
Alonso Guevara
53950f8442
Fix/model provider key injection check (#1799)
* Check available models for type validation

* Semver

* Fix ruff and pyright

* Apply feedback
2025-03-11 17:48:30 -06:00
Gabriel Nieves-Ponce
e39d869bed
Added support for verbose logging and csv-metadata to the prompt tune… (#1789)
* Added support for verbose logging and csv-metadata to the prompt tune client.

* Updated community report summarization file name and prompt template

* updated semversioner

* ran ruff linter

* Ran poe format

* Fix Ruff complains

* Fix a new ruff complain :P

* Pyright

* Fix tests

---------

Co-authored-by: Gabriel Nieves <gnievesponce@microsoft.com>
Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-03-11 14:55:02 -06:00
Alonso Guevara
e0d233fe10
Feat/llm provider query (#1735)
* Add ModelProvider to Query package.

* Spellcheck + others

* Semver

* Fix tests

* Format

* Fix Pyright

* Fix tests

* Fix for smoke tests
2025-02-24 18:35:51 -06:00
Alonso Guevara
7bdeaee94a
Create Language Model Providers and Registry methods. Remove fnllm coupling (#1724)
* Base structure

* Add fnllm providers and Mock LLM

* Remove fnllm coupling, introduce llm providers

* Ruff + Tests fix

* Spellcheck

* Semver

* Format

* Default MockChat params

* Fix more tests

* Fix embedding smoke test

* Fix embeddings smoke test

* Fix MockEmbeddingLLM

* Rename LLM to model. Package organization

* Fix prompt tuning

* Oops

* Oops II
2025-02-20 08:56:20 -06:00
Dayenne Souza
b94290ec2b
add option to add metadata into text chunks (#1681)
* add new options

* add metadata json into input document

* remove doc change

* add metadata column into text loader

* prepend_metadata

* run fix

* fix tests and patch

* fix test

* add watrning for metadata tokens > config size

* fix typo and run fix

* fix test_integration

* fix test

* run check

* rename and fix chunking

* fix

* fix

* fiz test verbs

* fix

* fix tests

* fix chunking

* fix index

* fix cosmos test

* fix vars

* fix after PR

* fix
2025-02-12 09:38:03 -08:00
Derek Worthen
c644338bae
Refactor config (#1593)
* Refactor config

- Add new ModelConfig to represent LLM settings
    - Combines LLMParameters, ParallelizationParameters, encoding_model, and async_mode
- Add top level models config that is a list of available LLM ModelConfigs
- Remove LLMConfig inheritance and delete LLMConfig
    - Replace the inheritance with a model_id reference to the ModelConfig listed in the top level models config
- Remove all fallbacks and hydration logic from create_graphrag_config
    - This removes the automatic env variable overrides
- Support env variables within config files using Templating
    - This requires "$" to be escaped with extra "$" so ".*\\.txt$" becomes ".*\\.txt$$"
- Update init content to initialize new config file with the ModelConfig structure

* Use dict of ModelConfig instead of list

* Add model validations and unit tests

* Fix ruff checks

* Add semversioner change

* Fix unit tests

* validate root_dir in pydantic model

* Rename ModelConfig to LanguageModelConfig

* Rename ModelConfigMissingError to LanguageModelConfigMissingError

* Add validationg for unexpected API keys

* Allow skipping pydantic validation for testing/mocking purposes.

* Add default lm configs to verb tests

* smoke test

* remove config from flows to fix llm arg mapping

* Fix embedding llm arg mapping

* Remove timestamp from smoke test outputs

* Remove unused "subworkflows" smoke test properties

* Add models to smoke test configs

* Update smoke test output path

* Send logs to logs folder

* Fix output path

* Fix csv test file pattern

* Update placeholder

* Format

* Instantiate default model configs

* Fix unit tests for config defaults

* Fix migration notebook

* Remove create_pipeline_config

* Remove several unused config models

* Remove indexing embedding and input configs

* Move embeddings function to config

* Remove skip_workflows

* Remove skip embeddings in favor of explicit naming

* fix unit test spelling mistake

* self.models[model_id] is already a language model. Remove redundant casting.

* update validation errors to instruct users to rerun graphrag init

* instantiate LanguageModelConfigs with validation

* skip validation in unit tests

* update verb tests to use default model settings instead of skipping validation

* test using llm settings

* cleanup verb tests

* remove unsafe default model config

* remove the ability to skip pydantic validation

* remove None union types when default values are set

* move vector_store from embeddings to top level of config and delete resolve_paths

* update vector store settings

* fix vector store and smoke tests

* fix serializing vector_store settings

* fix vector_store usage

* fix vector_store type

* support cli overrides for loading graphrag config

* rename storage to output

* Add --force flag to init

* Remove run_id and resume, fix Drift config assignment

* Ruff

---------

Co-authored-by: Nathan Evans <github@talkswithnumbers.com>
Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2025-01-21 17:52:06 -06:00
Josh Bradley
cbb8f8788e
Fix storage class instantiation (#1582) 2025-01-03 17:39:44 -05:00
Nathan Evans
a2647da473
Simplify flow config (#1554)
* Flatten compute_communities config

* Remove cluster strategy type

* Flatten create_base_text_units config

* Move cluster seed to config default, leave as None in functions

* Remove "prechunked" logic

* Remove hard-coded encoding model

* Remove unused variables

* Strongly type embed_config

* Simplify layout_graph config

* Semver

* Fix integration test

* Fix config unit tests: ignore new config defaults

* Remove pipeline integ test
2024-12-27 16:38:36 -08:00
KennyZhang1
8368b12532
Add Cosmos DB storage/cache option (#1431)
* added cosmosdb constructor and database methods

* added rest of abstract method headers

* added cosmos db container methods

* implemented has and delete methods

* finished implementing abstract class methods

* integrated class into storage factory

* integrated cosmosdb class into cache factory

* added support for new config file fields

* replaced primary key cosmosdb initialization with connection strings

* modified cosmosdb setter to require json

* Fix non-default emitters

* Format

* Ruff

* ruff

* first successful run of cosmosdb indexing

* removed extraneous container_name setting

* require base_dir to be typed as str

* reverted merged changed from closed branch

* removed nested try statement

* readded initial non-parquet emitter fix

* added basic support for parquet emitter using internal conversions

* merged with main and resolved conflicts

* fixed more merge conflicts

* added cosmosdb functionality to query pipeline

* tested query for cosmosdb

* collapsed cosmosdb schema to use minimal containers and databases

* simplified create_database and create_container functions

* ruff fixes and semversioner

* spellcheck and ci fixes

* updated pyproject toml and lock file

* apply fixes after merge from main

* add temporary comments

* refactor cache factory

* refactored storage factory

* minor formatting

* update dictionary

* fix spellcheck typo

* fix default value

* fix pydantic model defaults

* update pydantic models

* fix init_content

* cleanup how factory passes parameters to file storage

* remove unnecessary output file type

* update pydantic model

* cleanup code

* implemented clear method

* fix merge from main

* add test stub for cosmosdb

* regenerate lock file

* modified set method to collapse parquet rows

* modified get method to collapse parquet rows

* updated has and delete methods and docstrings to adhere to new schema

* added prefix helper function

* replaced delimiter for prefixed id

* verified empty tests are passing

* fix merges from main

* add find test

* update cicd step name

* tested querying for new schema

* resolved errors from merge conflicts

* refactored set method to handle cache in new schema

* refactored get method to handle cache in new schema

* force unique ids to be written to cosmos for nodes

* found bug with has and delete methods

* modified has and delete to work with cache in new schema

* fix the merge from main

* minor typo fixes

* update lock file

* spellcheck fix

* fix init function signature

* minor formatting updates

* remove https protocol

* change localhost to 127.0.0.1 address

* update pytest to use bacj engine

* verified cache tests

* improved speed of has function

* resolved pytest error with find function

* added test for child method

* make container_name variable private as _container_name

* minor variable name fix

* cleanup cosmos pytest and make the cosmosdb storage class operations more efficient

* update cicd to use different cosmosdb emulator

* test with http protocol

* added pytest for clear()

* add longer timeout for cosmosdb emulator startup

* revert http connection back to https

* add comments to cicd code for future dev usage

* set to container and database clients to none upon deletion

* ruff changes

* add comments to cicd code

* removed unneeded None statements and ruff fixes

* more ruff fixes

* Update test_run.py

* remove unnecessary call to delete container

* ruff format updates

* Reverted test_run.py

* fix ruff formatter errors

* cleanup variable names to be more consistent

* remove extra semversioner file

* revert pydantic model changes

* revert pydantic model change

* revert pydantic model change

* re-enable inline formatting rule

* update documentation in dev guide

---------

Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
Co-authored-by: Josh Bradley <joshbradley@microsoft.com>
2024-12-19 13:43:21 -06:00
Nathan Evans
1d68af308b
Community workflow (#1495)
* Create separate communities workflow

* Add test for new workflow

* Rename workflows

* Collapse subflows into parents

* Rename flows, reuse variables

* Semver

* Fix integration test

* Fix smoke tests

* Fix megapipeline format

* Rename missed files

---------

Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2024-12-11 15:41:16 -06:00
Alonso Guevara
1c3b0f34c3
Chore/lib updates (#1477)
* Update dependencies and fix issues

* Format

* Semver

* Fix Pyright

* Pyright

* More Pyright

* Pyright
2024-12-06 14:08:24 -06:00
Nathan Evans
d17dfd01f9
Graph collapse (#1464)
* Refactor graph creation

* Semver

* Spellcheck

* Update integ pipeline

* Fix cast

* Improve pandas chaining

* Cleaner apply

* Use list comprehensions

---------

Co-authored-by: Alonso Guevara <alonsog@microsoft.com>
2024-12-05 11:57:26 -06:00
Josh Bradley
dad2176b3c
Miscellaneous code cleanup procedures (#1452) 2024-11-27 13:27:43 -05:00
Nathan Evans
634e3ed62a
Transient entity graph (#1349)
* Make base_entity_graph transient

* Add transient snapshots

* Semver

* Fix unit test

* Fix smoke tests
2024-11-04 17:23:29 -08:00
Nathan Evans
ce5b1207e0
Collapse graph documents workflows (#1284)
* Copy base documents logic into final documents

* Delete create_base_documents

* Combine graph creation under create_base_entity_graph

* Delete collapsed workflows

* Migrate most graph internals to nx.Graph

* Fix None edge case

* Semver

* Remove comment typo

* Fix smoke tests
2024-10-15 13:58:58 -06:00
Nathan Evans
61b3d6d56a
Migrate helper verbs (#1248)
* Remove genid

* Move snapshot_rows

* Move snapshot

* Delete spread_json

* Delete unzip

* Delete zip

* Move unpack_graph

* Move compute_edge_combined_degree

* Delete create_graph

* Delete concat

* Delete text replace

* Delete text_translate

* Move text_split

* Inline aggregate override

* Move cluster_graph

* Move merge_graphs

* Semver

* Move text_chunk

* Move layout_graph and fix some __init__s

* Move extract_covariates

* Rename text_split -> split_text

* Move extract_entities

* Move summarize_descriptions

* Rename text_chunk -> chunk_text

* Move community report creation

* Remove verb-level packing operators

* Streamline some naming

* Streamline param name/order

* Move mock LLM data to tests

* Fixed missed rename

* Update some strategy refs

* Rename run_gi

* Inject mock responses into integ test config
2024-10-09 13:46:44 -07:00
Nathan Evans
f5b4d2fea5
Ci streamline (#988)
* Remove excess vars from gh-pages build

* Delete redundant javascript ci

* Pull apart testing CI

* Clean up integration tests build

* Move storage tests to integration CI

* Take py 3.10 out of smoke tests matrix

* Use minimum supported python version for most tests

* Re-run main CI on any test change

* Add Josh and Kenny to author list

* Update auto-resolve perms
2024-08-21 15:16:15 -06:00
Alonso Guevara
81b81cf60b Initial Release 2024-07-01 15:25:30 -06:00