[nrf52840] reinitialize all peripherals except uart for pseudo reset (#2878)

There are some problems if radio is not reinitialized during pseudo reset:
* It may trigger unexpected otPlatRadioTxDone(), and cause the device to hang;
* The uncleared radio timer queue is invalid, it may block the new added timer which has a larger targer time.

Note: The clock init/deinit is disabled during radio init/deinit.

examples/platforms/nrf52840/platform-nrf5.h

@@ -148,12 +148,6 @@ void nrf5RadioInit(void);
  */
 void nrf5RadioDeinit(void);
 
-/**
- * Pseudo reset Radio driver.
- *
- */
-void nrf5RadioPseudoReset(void);
-
 /**
  * Function for processing Radio.
  *

examples/platforms/nrf52840/platform.c

@@ -38,11 +38,14 @@
 #include <openthread/platform/logging.h>
 
 #include "platform-nrf5.h"
+#include "platform.h"
 #include <drivers/clock/nrf_drv_clock.h>
 #include <nrf.h>
 
 #include <openthread/config.h>
 
+extern bool gPlatformPseudoResetWasRequested;
+
 void __cxa_pure_virtual(void)
 {
     while (1)
@@ -51,17 +54,9 @@ void __cxa_pure_virtual(void)
 
 void PlatformInit(int argc, char *argv[])
 {
-    extern bool gPlatformPseudoResetWasRequested;
-
     if (gPlatformPseudoResetWasRequested)
     {
-        nrf5RadioPseudoReset();
-        nrf5AlarmDeinit();
-        nrf5AlarmInit();
-
-        gPlatformPseudoResetWasRequested = false;
-
-        return;
+        PlatformDeinit();
     }
 
     (void)argc;
@@ -80,7 +75,10 @@ void PlatformInit(int argc, char *argv[])
 #endif
     nrf5AlarmInit();
     nrf5RandomInit();
-    nrf5UartInit();
+    if (!gPlatformPseudoResetWasRequested)
+    {
+        nrf5UartInit();
+    }
 #ifndef SPIS_TRANSPORT_DISABLE
     nrf5SpiSlaveInit();
 #endif
@@ -88,6 +86,8 @@ void PlatformInit(int argc, char *argv[])
     nrf5CryptoInit();
     nrf5RadioInit();
     nrf5TempInit();
+
+    gPlatformPseudoResetWasRequested = false;
 }
 
 void PlatformDeinit(void)
@@ -99,7 +99,10 @@ void PlatformDeinit(void)
 #ifndef SPIS_TRANSPORT_DISABLE
     nrf5SpiSlaveDeinit();
 #endif
-    nrf5UartDeinit();
+    if (!gPlatformPseudoResetWasRequested)
+    {
+        nrf5UartDeinit();
+    }
     nrf5RandomDeinit();
     nrf5AlarmDeinit();
 #if (OPENTHREAD_CONFIG_LOG_OUTPUT == OPENTHREAD_CONFIG_LOG_OUTPUT_PLATFORM_DEFINED) || \
@@ -110,7 +113,6 @@ void PlatformDeinit(void)
 
 bool PlatformPseudoResetWasRequested(void)
 {
-    extern bool gPlatformPseudoResetWasRequested;
     return gPlatformPseudoResetWasRequested;
 }
 

examples/platforms/nrf52840/radio.c

@@ -223,13 +223,9 @@ void nrf5RadioInit(void)
 }
 
 void nrf5RadioDeinit(void)
-{
-    nrf_802154_deinit();
-}
-
-void nrf5RadioPseudoReset(void)
 {
     nrf_802154_sleep();
+    nrf_802154_deinit();
     sPendingEvents = 0;
 }
 

third_party/NordicSemiconductor/drivers/radio/platform/clock/nrf_802154_clock_sdk.c

@@ -65,12 +65,12 @@ static void clock_handler(nrf_drv_clock_evt_type_t event)
 
 void nrf_802154_clock_init(void)
 {
-    nrf_drv_clock_init();
+    // Intentionally empty.
 }
 
 void nrf_802154_clock_deinit(void)
 {
-    nrf_drv_clock_uninit();
+    // Intentionally empty.
 }
 
 void nrf_802154_clock_hfclk_start(void)